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I have replaced all my windows with the Dakota vinyl with argon and southern low E for Houston TX.
While the installation may very well be A problem, the main problem is most likely with the Low-E used. Do you know which Low-E you got? Or, do you know what the SHGC on your windows? If it is .29 - .31, you did not get a "southern low E for Houston", you got a general low-e. The optimal low-e for Houston will have a SHGC (window as a whole) of .21 - .22. Cardinal's Low-E366, PPG's Solarban70, or Guardian's Climaguard 55/27 are the best choices for our climate.
As to the installation,iIf your windows were caulked without any type of perimeter expanding foam, they may very well be letting the outdoor air infiltrate around the new windows.